amalgame/commit

first steps towards direct editing of the reference alignment

 api/mapping.pl              | 59 +++++++++++++++++++++++++++++++++++++++++++++
 components/amalgame/util.pl |  3 +++
 web/css/application.css     | 11 +++++++++
 web/js/evaluater.js         | 32 ++++++++++++++++++++++++
 4 files changed, 70 insertions(+), 35 deletions(-)